Summary: A new large-scale genome-wide study has identified 18 new genetic risk factors for opioid use disorder, bringing the number of OUD-associated genes from 1-19.
A new human genomics study led by Yale scientists has identified genetic risk factors for opioid use disorder (OUD) and related substance use disorders according to a new large-scale genome-wide association study—increasing the number of risk genes known from 1 to 19.
This work comes as opioid-related overdoses have reached an all-time high in the United States and continue to surge around the world. The findings, published in Molecular Psychiatry, address a pressing need as genetic discovery for OUD has been limited in recent years. Genetic discovery leads to better understanding of biology.
Senior author Joel Gelernter, MD, Foundations Fund Professor of Psychiatry and professor of genetics and of neuroscience at Yale, said not much is known about specific genetic factors that influence risk for OUD.
In this study, researchers worked to increase knowledge of OUD genetics by completing a meta-analysis for OUD—that is, putting together data from many different studies—and then by incorporating genetic information from other related substance use disorders for more gene-finding power.
Researchers examined genetic data from over 600,000 participants of European and African genetic ancestry, more information than prior studies on OUD risk variation.
The scientists identified genetic variation in 19 genes that was associated with OUD risk; OPRM1 and FURIN were two genes identified in the analysis of OUD alone, with many more genes identified in the analysis that incorporated information from OUD along with cannabis use disorder and alcohol use disorder.
“OPRM1 is a gene that encodes mu opioid receptors in the brain making it a prime genetic possibility for OUD—prior work showed that variation in this gene influences OUD risk. Our challenge was to move beyond OPRM1,” Gelernter said.
“Our effort brought in as much genome-wide data as possible. We wanted to compile as many datasets and samples as we could,” said Joseph D. Deak, Ph.D., postdoctoral fellow in the Yale Department of Psychiatry Division of Human Genetics and the paper’s first author.
“We believe our findings have identified genetic risk specific to OUD as well as genetic risk shared more broadly with other kinds of substance use disorders. That is consistent with prior studies that show specific genetic effects for certain drugs along with shared genetic liability for substance use disorders more broadly.”
The findings also reveal genetic connections between the development of OUD and related conditions such as chronic pain, the inability to work because of a sickness or a disability, and other psychiatric outcomes like anxiety, depression, and PTSD.
“These genetic findings line up with common features often seen in the clinical presentation of individuals diagnosed with OUD. We found that genetic overlap,” Deak said.
We know that there are many factors that influence risk for substance use disorders such as OUD. These results do not say that anyone with these specific genetic risk factors should or shouldn’t be prescribed opioids to manage pain or anything like that; this work doesn’t support that conclusion, but it could help explain some unanswered questions as we continue to expand on these findings in hopes of helping address public health concerns related to opioids.
About this genetics and addiction research news
Author: Christopher Gardner
Contact: Christopher Gardner – Yale
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Original Research: Open access.
“Genome-wide association study in individuals of European and African ancestry and multi-trait analysis of opioid use disorder identifies 19 independent genome-wide significant risk loci” by Joseph D. Deak et al. Molecular Psychiatry
Genome-wide association study in individuals of European and African ancestry and multi-trait analysis of opioid use disorder identifies 19 independent genome-wide significant risk loci
Despite the large toll of opioid use disorder (OUD), genome-wide association studies (GWAS) of OUD to date have yielded few susceptibility loci.
We performed a large-scale GWAS of OUD in individuals of European (EUR) and African (AFR) ancestry, optimizing genetic informativeness by performing MTAG (Multi-trait analysis of GWAS) with genetically correlated substance use disorders (SUDs).
Meta-analysis included seven cohorts: the Million Veteran Program, Psychiatric Genomics Consortium, iPSYCH, FinnGen, Partners Biobank, BioVU, and Yale-Penn 3, resulting in a total N = 639,063 (Ncases = 20,686;Neffective = 77,026) across ancestries. OUD cases were defined as having a lifetime OUD diagnosis, and controls as anyone not known to meet OUD criteria. We estimated SNP-heritability (h2SNP) and genetic correlations (rg).
Based on genetic correlation, we performed MTAG on OUD, alcohol use disorder (AUD), and cannabis use disorder (CanUD). A leave-one-out polygenic risk score (PRS) analysis was performed to compare OUD and OUD-MTAG PRS as predictors of OUD case status in Yale-Penn 3.
The EUR meta-analysis identified three genome-wide significant (GWS; p ≤ 5 × 10−8) lead SNPs—one at FURIN (rs11372849; p = 9.54 × 10−10) and two OPRM1 variants (rs1799971, p = 4.92 × 10−09; rs79704991, p = 1.11 × 10−08; r2 = 0.02). Rs1799971 (p = 4.91 × 10−08) and another OPRM1 variant (rs9478500; p = 1.95 × 10−08; r2 = 0.03) were identified in the cross-ancestry meta-analysis. Estimated h2SNP was 12.75%, with strong rg with CanUD (rg = 0.82; p = 1.14 × 10−47) and AUD (rg = 0.77; p = 6.36 × 10−78).
The OUD-MTAG resulted in a GWAS Nequivalent = 128,748 and 18 independent GWS loci, some mapping to genes or gene regions that have previously been associated with psychiatric or addiction phenotypes.
The OUD-MTAG PRS accounted for 3.81% of OUD variance (beta = 0.61;s.e. = 0.066; p = 2.00 × 10−16) compared to 2.41% (beta = 0.45; s.e. = 0.058; p = 2.90 × 10−13) explained by the OUD PRS. The current study identified OUD variant associations at OPRM1, single variant associations with FURIN, and 18 GWS associations in the OUD-MTAG.
The genetic architecture of OUD is likely influenced by both OUD-specific loci and loci shared across SUDs.
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